Publications

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Mitochondrial Carriers Link the Catabolism of Hydroxyaromatic Compounds to the Central Metabolism in Candida parapsilosis

Zeman I, Neboháčová M, Gérecová G, Katonová K, Jánošiková E, Jakúbková M, Centárová I, Dunčková I, Tomáška Ĺ, Pryszcz LP, Gabaldón T, Nosek J. (2016) Mitochondrial Carriers Link the Catabolism of Hydroxyaromatic Compounds to the Central Metabolism in Candida parapsilosis. G3 (Bethesda). 6(12):4047-4058 ...

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Gabaldón T, Naranjo MA, Marcet-Houben M. (2016) Evolutionary genomics of yeast pathogens in the Saccharomycotina. FEMS Yeast Res. 16(6) Jiang Y, Oron TR, et. al. (including Gabaldón T) (2016) An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biol. 7(1):184. ...

Long Non-Coding RNAs As Potential Novel Prognostic Biomarkers in Colorectal Cancer

Saus E, Brunet-Vega A, Iraola-Guzmán S, Pegueroles C, Gabaldón T, Pericay C. (2016) Long Non-Coding RNAs As Potential Novel Prognostic Biomarkers in Colorectal Cancer. Front Genet. 2016 Apr 12;7:54. doi: 10.3389/fgene.2016.00054. ...

Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems

Mariotti M, Lobanov AV, Manta B, Santesmasses D, Bofill A, Guigó R, Gabaldón T, Gladyshev VN. (2016) Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems. Mol Biol Evol. 33(9):2441-53 ...

Standardized benchmarking in the quest for orthologs

Altenhoff AM, Boeckmann B, Capella-Gutierrez S, Dalquen DA, DeLuca T, Forslund K, Huerta-Cepas J, Linard B, Pereira C, Pryszcz LP, Schreiber F, da Silva AS, Szklarczyk D, Train CM, Bork P, Lecompte O, von Mering C, Xenarios I, Sjölander K, Jensen LJ, Martin MJ, Muffato M; Quest for Orthologs consortium., Gabaldón T, Lewis SE, Thomas PD, Sonnhammer E, Dessimoz C. (2016) Standardized benchmarking in the quest for orthologs. Nat Methods. 2016 May;13(5):425-30. doi: 10.1038/nmeth.3830. ...