Publications

All publications

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Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems

Mariotti M, Lobanov AV, Manta B, Santesmasses D, Bofill A, Guigó R, Gabaldón T, Gladyshev VN. (2016) Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems. Mol Biol Evol. 33(9):2441-53 ...

Standardized benchmarking in the quest for orthologs

Altenhoff AM, Boeckmann B, Capella-Gutierrez S, Dalquen DA, DeLuca T, Forslund K, Huerta-Cepas J, Linard B, Pereira C, Pryszcz LP, Schreiber F, da Silva AS, Szklarczyk D, Train CM, Bork P, Lecompte O, von Mering C, Xenarios I, Sjölander K, Jensen LJ, Martin MJ, Muffato M; Quest for Orthologs consortium., Gabaldón T, Lewis SE, Thomas PD, Sonnhammer E, Dessimoz C. (2016) Standardized benchmarking in the quest for orthologs. Nat Methods. 2016 May;13(5):425-30. doi: 10.1038/nmeth.3830. ...

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

Furió-Tarí P, Tarazona S, Gabaldón T, Enright AJ, Conesa A. (2016) spongeScan: A web for detecting microRNA binding elements in lncRNA sequences. Nucleic Acids Res. 44(W1):W176-80. ...

Redundans: an assembly pipeline for highly heterozygous genomes

Pryszcz LP, Gabaldón T(2016) Redundans: an assembly pipeline for highly heterozygous genomes. Nucleic Acids Res. 44(12):e113. ...

Genome sequence of the olive tree, Olea europaea. Gigascience

Cruz F, Julca I, Gómez-Garrido J, Loska D, Marcet-Houben M, Cano E, Galán B, Frias L, Ribeca P, Derdak S, Gut M, Sánchez-Fernández M, García JL, Gut IG, Vargas P, Alioto TS, Gabaldón T. (2016) Genome sequence of the olive tree, Olea europaea. Gigascience. 2016 Jun 27;5:29. doi: 10.1186/s13742-016-0134-5. ...