Publications

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eggNOG v4.0: nested orthology inference across 3686 organisms

Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldón T, Rattei T, Creevey C, Kuhn M, Jensen LJ, von Mering C, Bork P. (2014) eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Res. 42(1):D231-9. ...

Complete DNA Sequence of Kuraishia capsulata Illustrates Novel Genomic Features among Budding Yeasts (Saccharomycotina)

Morales L, Noel B, Porcel B, Marcet-Houben M, Hullo MF, Sacerdot C, Tekaia F, Leh-Louis V, Despons L, Khanna V, Aury JM, Barbe V, Couloux A, Labadie K, Pelletier E, Souciet JL, Boekhout T, Gabaldón T, Wincker P, Dujon B. (2013). Complete DNA Sequence of Kuraishia capsulata Illustrates Novel Genomic Features among Budding Yeasts (Saccharomycotina). Genome Biol Evol. 5(12):2524-39. ...

Unexpected Genomic Variability in Clinical and Environmental Strains of the Pathogenic Yeast Candida parapsilosis

Pryszcz LP, Németh T, Gácser A, Gabaldón T. (2013) Unexpected Genomic Variability in Clinical and Environmental Strains of the Pathogenic Yeast Candida parapsilosis. Genome Biol Evol. 5(12):2382-92. ...

The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution

Traeger S, Altegoer F, Freitag M, Gabaldón T, Kempken F, Kumar A, Marcet-Houben M, Pöggeler S, Stajich JE, Nowrousian M. (2013) The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. PLoS Genet. 9(9):e1003820. ...

Comparative genomics of emerging pathogens in the Candida glabrata clade

Gabaldón T, Martin T, Marcet-Houben M, Durrens P, Bolotin-Fukuhara M, Lespinet O, Arnaise S, Boisnard S, Aguileta G, Atanasova R, Bouchier C, Couloux A, Creno S, Almeida Cruz J, Devillers H, Enache-Angoulvant A, Guitard J, Jaouen L, Ma L, Marck C, Neuvéglise C, Pelletier E, Pinard A, Poulain J, Recoquillay J, Westhof E, Wincker P, Dujon B, Hennequin C, Fairhead C. (2013) Comparative genomics of emerging pathogens in the Candida glabrata clade. BMC Genomics. 14:623 ...