Publications

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Outbreaks of fluconazole-resistant Candida parapsilosis are driven by low-biofilm-producing isolates that emerge under host selection

Daneshnia F, Gunasekaran D, Bergin S, Lombardi L, Perry AM, Cai L, Walker LA, Nemeth T, Hilmioglu-Polat S, Salzberg LI, Ebadati A, Köhler T, Braune G, de Almeida JN, Caggiano G, Kus JV, Mosharaf Ghahfarokhy P, Munoz J, Floyd DJ, Fuentes-Palacios D, Gonçalves SM, Gonçales RA, Salehi M, Desai JV, Carvalho A, Mei S, Munro CA, Hopke A, Gabaldón T, Gacser A, Kurzai O, Butler G, Perlin DS, Fang W, Nobile CJ, Mansour MK, Arastehfar A. Outbreaks of fluconazole-resistant Candida…...

Genetically Distinct African Swine Fever Virus Genotype II Variant in Wild Boar, Spain, 2025-2026

Gallardo C, Marcet-Houben M, Agüero M, Nieto R, Casado N, Soler A, Ruano MJ, Villalba R, Fernández-Pinero J, Simón A, Pérez C, Gómez C, García C, Labrador M, Argilaguet J, Coronado L, Majó N, Aguilera-Sepulveda P, Aldea I, Gabaldón T, Gómez MB, Arias M. Genetically Distinct African Swine Fever Virus Genotype II Variant in Wild Boar, Spain, 2025-2026. Emerg Infect Dis. 2026 Sep;32(9):1497-1501. doi: 10.3201/eid3209.260360. PMID: 42661289...

Genome-wide atlas of lncRNAs in Mucorales reveals conserved regulators essential for fungal viability and development

Tahiri G, Hovhannisyan H, Lax C, Navarro E, Gabaldón T, Nicolás FE, Garre V. Genome-wide atlas of lncRNAs in Mucorales reveals conserved regulators essential for fungal viability and development. Cell Rep. 2026 Jul 28;45(7):117631. doi: 10.1016/j.celrep.2026.117631. Epub 2026 Jul 3. PMID: 42397739...

Chromosome-level assembly and annotation of the Jaguar (Panthera onca) genome

Cruz F, Gómez-Garrido J, Vlasova A, Tarifa-Rieschle I, Campos MC, Pisciottano F, Gut M, Alioto TS, Saragüeta P, Gabaldón T. Chromosome-level assembly and annotation of the Jaguar (Panthera onca) genome. BMC Genom Data. 2026 Jun 20;27(1):73. doi: 10.1186/s12863-026-01455-1. PMID: 42323592; PMCID: PMC13548542...

Gene ancestries reveal diverse microbial associations during eukaryogenesis

Bernabeu M, Manzano-Morales S, Marcet-Houben M, Gabaldón T. Gene ancestries reveal diverse microbial associations during eukaryogenesis. Nature. 2026 Aug;656(8127):399-405. doi: 10.1038/s41586-026-10639-9. Epub 2026 Jun 10. PMID: 42271057; PMCID: PMC13468126...